STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0873Uncharacterized protein. (310 aa)    
Predicted Functional Partners:
DFW101_1691
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.839
DFW101_1335
NAD-dependent epimerase/dehydratase family protein.
 
    0.831
DFW101_0872
Putative PAS/PAC sensor protein.
  
    0.782
DFW101_1953
3-demethylubiquinone-9 3-methyltransferase.
  
    0.744
DFW101_0887
CsbD family protein; Belongs to the UPF0337 (CsbD) family.
   
    0.642
DFW101_0874
Uncharacterized protein.
       0.599
DFW101_0938
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.515
DFW101_0854
LapA_dom domain-containing protein.
   
    0.499
DFW101_2226
Isochorismatase hydrolase.
   
    0.499
DFW101_2139
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
   
    0.495
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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