STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_0884Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family. (205 aa)    
Predicted Functional Partners:
DFW101_1116
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
   
 0.977
DFW101_3083
DsrE family protein.
  
 
 0.953
DFW101_1901
(R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit.
 
    0.886
DFW101_0976
CoA-disulfide reductase.
  
 
 0.864
DFW101_3265
CoA-disulfide reductase.
  
 
 0.864
DFW101_0303
Selenocysteine-specific translation elongation factor.
 
   
 0.834
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.812
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.808
DFW101_1873
Quinone-interacting membrane-bound oxidoreductase complex subunit C.
    
 0.729
DFW101_1155
Uncharacterized protein.
    
 0.725
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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