STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1344Transcriptional regulator, MucR family. (137 aa)    
Predicted Functional Partners:
DFW101_1217
MJ0042 family finger-like protein.
  
     0.701
DFW101_3408
LppC family lipoprotein.
  
     0.690
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
    0.666
DFW101_1825
Uncharacterized protein.
  
     0.654
DFW101_2478
DNA polymerase III delta.
  
     0.647
DFW101_1824
Surface antigen (D15).
  
     0.619
DFW101_0713
YHS domain-containing protein.
  
     0.605
DFW101_0771
Uncharacterized protein.
  
     0.591
DFW101_1766
FG-GAP repeat protein.
  
     0.589
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.580
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.