STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1350NLP/P60 protein. (457 aa)    
Predicted Functional Partners:
DFW101_1349
Uncharacterized protein.
       0.648
DFW101_1508
Peptidase_M15_4 domain-containing protein.
 
     0.603
DFW101_1348
Uncharacterized protein.
       0.594
DFW101_1538
Metal dependent phosphohydrolase.
  
     0.573
DFW101_0317
Phage tape measure protein.
  
  
 0.560
DFW101_3489
Phage tape measure protein.
  
  
 0.560
DFW101_1347
Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
  
    0.557
DFW101_1351
Uncharacterized protein.
       0.556
DFW101_0435
Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
   0.498
DFW101_1346
NMT1 domain-containing protein.
 
     0.491
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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