STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_1968ABC-1 domain-containing protein. (558 aa)    
Predicted Functional Partners:
DFW101_0971
Glycosyl transferase group 1.
  
 0.701
DFW101_1969
Uncharacterized protein.
 
     0.653
DFW101_2696
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.649
DFW101_0511
Uncharacterized protein.
    
 0.635
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
    
 0.626
DFW101_1970
RNA 2',3'-cyclic phosphodiesterase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.593
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
   
  0.593
DFW101_2770
Methyltransferase type 11.
  
 
 0.586
DFW101_2692
Methyltransferase type 11.
   
 
 0.548
DFW101_0104
O-antigen polymerase.
   
 
 0.527
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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