STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2582Phenylacetate--CoA ligase. (432 aa)    
Predicted Functional Partners:
DFW101_1750
Succinate-semialdehyde dehydrogenase (NAD(P)(+)).
   
 0.844
DFW101_2166
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.844
DFW101_2676
Glycolaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.844
DFW101_3424
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.844
DFW101_1098
Phenylacetic acid degradation-related protein.
 
 
 0.818
DFW101_1271
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
 0.738
DFW101_1585
Cobyrinic acid ac-diamide synthase.
    
  0.712
DFW101_0816
Amino acid-binding ACT domain protein.
 
   0.701
DFW101_2581
Uncharacterized protein.
       0.669
gatA
Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
 0.539
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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