STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2623Uncharacterized protein. (71 aa)    
Predicted Functional Partners:
DFW101_2617
Metal dependent phosphohydrolase.
 
     0.956
DFW101_2621
C_GCAxxG_C_C family protein.
 
     0.954
DFW101_2620
Radical SAM domain protein.
 
     0.953
DFW101_2622
Methyltransferase type 11.
 
     0.951
DFW101_2619
AMP-dependent synthetase and ligase.
 
     0.935
DFW101_2624
4Fe-4S ferredoxin-type domain-containing protein.
 
     0.897
DFW101_2618
XshC-Cox1-family protein.
 
     0.892
DFW101_2625
Aldehyde dehydrogenase (FAD-independent).
 
     0.882
DFW101_2616
Phosphoglycerate mutase.
 
     0.735
DFW101_0365
Molybdenum-pterin binding protein.
  
     0.520
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.