STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_2806Conjugal transfer TrbH family protein. (473 aa)    
Predicted Functional Partners:
DFW101_2804
VirB8 family protein.
 
   
 0.944
DFW101_2811
Type II secretion system F domain protein.
 
     0.911
DFW101_2815
Shufflon domain protein.
 
   
 0.909
DFW101_2807
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.906
DFW101_2805
P-type conjugative transfer protein TrbG.
 
     0.891
DFW101_2803
P-type conjugative transfer protein TrbL.
 
     0.873
DFW101_2820
Uncharacterized protein.
 
     0.850
nhaA
Na(+)/H(+) antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
    0.838
DFW101_2818
Conjugative transfer signal peptidase TraF.
 
     0.830
DFW101_2796
Cobyrinic acid ac-diamide synthase.
 
   
 0.826
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.