STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3300Type II secretion system protein E. (456 aa)    
Predicted Functional Partners:
DFW101_3301
Type II secretion system F domain protein.
 
  
 0.985
DFW101_3302
Type II secretion system F domain protein.
 
  
 0.960
DFW101_3297
Type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.959
DFW101_3299
Cobyrinic acid ac-diamide synthase.
 
  
 0.948
DFW101_3296
Flp pilus assembly protein CpaB.
 
  
 0.946
DFW101_2801
CagE, TrbE, VirB component of type IV transporter system, conserved region.
 
  
 0.861
DFW101_2800
Type IV secretory pathway VirB3 family protein.
    
 0.841
DFW101_1660
Peptidase A24A prepilin type IV.
 
   
 0.797
DFW101_2786
Flp/Fap pilin component.
 
  
 0.763
DFW101_3305
TadE family protein.
 
  
 0.729
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.