STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3413GntR domain protein. (232 aa)    
Predicted Functional Partners:
DFW101_3253
Acetyl-CoA carboxylase.
  
  
 0.788
DFW101_2166
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
    
 0.705
DFW101_1846
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.660
DFW101_2827
Short-chain dehydrogenase/reductase SDR.
  
 
 0.660
DFW101_3258
3-oxoacyl-(Acyl-carrier-protein) reductase.
  
 
 0.660
DFW101_1403
Transcriptional regulator, AraC family.
 
  
 0.630
DFW101_3424
Succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.624
DFW101_1750
Succinate-semialdehyde dehydrogenase (NAD(P)(+)).
    
 0.583
DFW101_2676
Glycolaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.583
DFW101_0859
(S)-2-hydroxy-acid oxidase.
  
  
 0.582
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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