node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADQ79071.1 | ADQ79072.1 | Palpr_0921 | Palpr_0922 | Cold-shock DNA-binding protein family; InterPro IPR002059: IPR011129; KEGG: gfo:GFO_1575 cold shock-like protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain. | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | 0.665 |
ADQ79071.1 | ADQ79073.1 | Palpr_0921 | Palpr_0923 | Cold-shock DNA-binding protein family; InterPro IPR002059: IPR011129; KEGG: gfo:GFO_1575 cold shock-like protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain. | KEGG: pdi:BDI_0476 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. | 0.476 |
ADQ79071.1 | rplC | Palpr_0921 | Palpr_2457 | Cold-shock DNA-binding protein family; InterPro IPR002059: IPR011129; KEGG: gfo:GFO_1575 cold shock-like protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.438 |
ADQ79072.1 | ADQ79071.1 | Palpr_0922 | Palpr_0921 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | Cold-shock DNA-binding protein family; InterPro IPR002059: IPR011129; KEGG: gfo:GFO_1575 cold shock-like protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain. | 0.665 |
ADQ79072.1 | ADQ79073.1 | Palpr_0922 | Palpr_0923 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | KEGG: pdi:BDI_0476 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. | 0.533 |
ADQ79072.1 | ADQ79912.1 | Palpr_0922 | Palpr_1773 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: pdi:BDI_3765 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP [...] | 0.499 |
ADQ79072.1 | nnrD | Palpr_0922 | Palpr_2722 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...] | 0.544 |
ADQ79072.1 | pnp | Palpr_0922 | Palpr_1663 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.718 |
ADQ79072.1 | rplC | Palpr_0922 | Palpr_2457 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.625 |
ADQ79072.1 | rplD | Palpr_0922 | Palpr_2458 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.584 |
ADQ79072.1 | rplJ | Palpr_0922 | Palpr_1723 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.509 |
ADQ79072.1 | rplM | Palpr_0922 | Palpr_1330 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.542 |
ADQ79072.1 | rplX | Palpr_0922 | Palpr_2468 | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.513 |
ADQ79073.1 | ADQ79071.1 | Palpr_0923 | Palpr_0921 | KEGG: pdi:BDI_0476 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. | Cold-shock DNA-binding protein family; InterPro IPR002059: IPR011129; KEGG: gfo:GFO_1575 cold shock-like protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain. | 0.476 |
ADQ79073.1 | ADQ79072.1 | Palpr_0923 | Palpr_0922 | KEGG: pdi:BDI_0476 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | 0.533 |
ADQ79912.1 | ADQ79072.1 | Palpr_1773 | Palpr_0922 | COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: pdi:BDI_3765 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP [...] | DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR011545: IPR005580: IPR 006162: IPR014001; KEGG: bvu:BVU_3240 ATP-independent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase. | 0.499 |
ADQ79912.1 | pnp | Palpr_1773 | Palpr_1663 | COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: pdi:BDI_3765 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP [...] | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.730 |
ADQ79912.1 | rplC | Palpr_1773 | Palpr_2457 | COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: pdi:BDI_3765 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP [...] | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.973 |
ADQ79912.1 | rplD | Palpr_1773 | Palpr_2458 | COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: pdi:BDI_3765 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP [...] | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.965 |
ADQ79912.1 | rplJ | Palpr_1773 | Palpr_1723 | COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 005225; KEGG: pdi:BDI_3765 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP [...] | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.959 |