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birA protein (Midichloria mitochondrii) - STRING interaction network
"birA" - Biotin-protein ligase in Midichloria mitochondrii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
birABiotin-protein ligase (239 aa)    
Predicted Functional Partners:
pccB
propionyl-CoA carboxylase subunit beta (511 aa)
   
  0.987
pcca-1
propionyl-CoA carboxylase subunit alpha (668 aa)
   
 
  0.977
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism (312 aa)
   
 
  0.950
coaX
Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis (258 aa)
   
        0.893
midi_00314
Hypothetical protein (64 aa)
              0.796
midi_00313
Ribosome-binding factor A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (121 aa)
              0.796
nadE
NAD+ synthetase (548 aa)
   
   
  0.596
midi_01200
Putative ABC transporter ATP-binding protein (818 aa)
   
 
  0.592
cdsA
Phosphatidate cytidylyltransferase (202 aa)
 
     
  0.553
obg
GTPase ObgE (224 aa)
 
     
  0.551
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria, C. Midichloria mitochondrii, C. Midichloria mitochondrii IricVA, Candidatus Midichloria, Candidatus Midichloria mitochondrii, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Ixodes ricinus endosymbiont, Ixodes ricinus endosymbiont 1 (IricES1), Midichloria, Midichloria mitochondrii, Midichloria mitochondrii IricVA, endosymbiont of Ixodes ricinus
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