STRINGSTRING
ddpX protein (Midichloria mitochondrii) - STRING interaction network
"ddpX" - D-Ala-D-Ala dipeptidase in Midichloria mitochondrii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpXD-Ala-D-Ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide (391 aa)    
Predicted Functional Partners:
bglX
Beta-glucosidase (319 aa)
 
            0.615
ddl
D-alanine-D-alanine ligase; Cell wall formation (575 aa)
 
 
 
  0.553
pheS
phenylalanyl-tRNA synthetase subunit alpha (341 aa)
              0.449
midi_00428
Hypothetical protein (54 aa)
              0.437
recG
ATP-dependent DNA helicase RecG (617 aa)
              0.430
midi_01239
Cytochrome B561 (152 aa)
   
          0.420
gpmI
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (508 aa)
              0.415
midi_00431
phospho-N-acetylmuramoyl-pentapeptide- transferase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (461 aa)
              0.415
midi_00430
Nitrogen regulator protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (362 aa)
              0.415
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria, C. Midichloria mitochondrii, C. Midichloria mitochondrii IricVA, Candidatus Midichloria, Candidatus Midichloria mitochondrii, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Ixodes ricinus endosymbiont, Ixodes ricinus endosymbiont 1 (IricES1), Midichloria, Midichloria mitochondrii, Midichloria mitochondrii IricVA, endosymbiont of Ixodes ricinus
Server load: low (14%) [HD]