STRINGSTRING
rbn protein (Midichloria mitochondrii) - STRING interaction network
"rbn" - Ribonuclease BN in Midichloria mitochondrii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbnRibonuclease BN (290 aa)    
Predicted Functional Partners:
folD
Methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate (292 aa)
              0.864
midi_00573
ferredoxin--NADP+ reductase (333 aa)
              0.861
midi_00576
Intradiol ring-cleavage dioxygenase (209 aa)
 
          0.659
midi_00574
Hypothetical protein (480 aa)
              0.607
midi_00575
Hypothetical protein (44 aa)
              0.595
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (244 aa)
         
  0.484
recG
ATP-dependent DNA helicase RecG (617 aa)
              0.483
midi_01214
Hypothetical protein (92 aa)
   
          0.481
trpS
tryptophanyl-tRNA synthetase (334 aa)
   
        0.479
galU
UTP glucose 1 phosphate uridylyltransferase (289 aa)
     
      0.478
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria, C. Midichloria mitochondrii, C. Midichloria mitochondrii IricVA, Candidatus Midichloria, Candidatus Midichloria mitochondrii, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Ixodes ricinus endosymbiont, Ixodes ricinus endosymbiont 1 (IricES1), Midichloria, Midichloria mitochondrii, Midichloria mitochondrii IricVA, endosymbiont of Ixodes ricinus
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