STRINGSTRING
rodA protein (Midichloria mitochondrii) - STRING interaction network
"rodA" - Rod shape determining protein rodA in Midichloria mitochondrii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rodARod shape determining protein rodA (372 aa)    
Predicted Functional Partners:
midi_00438
Peptidoglycan glycosyltransferase (606 aa)
 
  0.994
ftsI
Peptidoglycan synthetase FtsI (570 aa)
 
  0.978
ddl
D-alanine-D-alanine ligase; Cell wall formation (575 aa)
 
 
  0.957
mreB
Rod shape-determining protein MreB (334 aa)
 
 
  0.947
murG
N-acetylglucosaminyl transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) (366 aa)
 
  0.881
midi_00430
Nitrogen regulator protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (362 aa)
 
  0.878
prfA
Protein chain release factor A; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (359 aa)
              0.864
midi_00666
Hypothetical protein (305 aa)
   
        0.856
midi_00665
Hypothetical protein (316 aa)
              0.850
midi_00431
phospho-N-acetylmuramoyl-pentapeptide- transferase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (461 aa)
 
  0.840
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria, C. Midichloria mitochondrii, C. Midichloria mitochondrii IricVA, Candidatus Midichloria, Candidatus Midichloria mitochondrii, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Ixodes ricinus endosymbiont, Ixodes ricinus endosymbiont 1 (IricES1), Midichloria, Midichloria mitochondrii, Midichloria mitochondrii IricVA, endosymbiont of Ixodes ricinus
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