STRINGSTRING
rpmB protein (Midichloria mitochondrii) - STRING interaction network
"rpmB" - 50S ribosomal protein L28 in Midichloria mitochondrii
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmB50S ribosomal protein L28 (102 aa)    
Predicted Functional Partners:
rplJ
Ribosomal protein L10 (100 aa)
     
 
  0.999
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (275 aa)
     
 
  0.999
rplQ
Ribosomal protein L17 (139 aa)
   
 
  0.999
rpmA
Ribosomal protein L27 (85 aa)
   
 
  0.999
midi_01250
50S ribosomal protein L33 (54 aa)
   
 
  0.999
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (149 aa)
   
 
  0.999
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (226 aa)
     
 
  0.999
rplO
Ribosomal protein L15; Binds to the 23S rRNA (149 aa)
     
 
  0.999
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (126 aa)
   
 
  0.999
rplD
Ribosomal protein L4 (166 aa)
     
 
  0.999
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria, C. Midichloria mitochondrii, C. Midichloria mitochondrii IricVA, Candidatus Midichloria, Candidatus Midichloria mitochondrii, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Ixodes ricinus endosymbiont, Ixodes ricinus endosymbiont 1 (IricES1), Midichloria, Midichloria mitochondrii, Midichloria mitochondrii IricVA, endosymbiont of Ixodes ricinus
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