STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJI91750.1Putative ABC transporter-binding protein precursor. (411 aa)    
Predicted Functional Partners:
sugB_4
Trehalose transport system permease protein SugB.
 
 0.980
araP
L-arabinose transport system permease protein AraP.
 
  0.973
ugpC_5
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
  0.940
OJI91745.1
snoaL-like polyketide cyclase.
 
     0.858
OJI91747.1
snoaL-like domain protein.
 
     0.858
OJI91743.1
Cupin domain protein.
 
     0.852
OJI91744.1
snoaL-like polyketide cyclase.
 
     0.852
OJI91741.1
Hypothetical protein.
 
     0.839
OJI91742.1
Methionine synthase.
 
     0.837
sugB_1
Trehalose transport system permease protein SugB.
  
 0.834
Your Current Organism:
Planktotalea frisia
NCBI taxonomy Id: 696762
Other names: DSM 23709, LMG 25294, LMG:25294, P. frisia, Planktotalea frisia Hahnke et al. 2012, Rhodobacteraceae bacterium SH6-1, strain SH6-1
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