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STRINGSTRING
Mettu_0001 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0001" - PFAM: Transposase IS3/IS911 in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0001PFAM- Transposase IS3/IS911; KEGG- rms-RMA_0745 transposase (107 aa)    
Predicted Functional Partners:
Mettu_1068
PFAM- Transposase IS3/IS911; KEGG- yen-YE3040 transposase for insertion element IS3 (121 aa)
    
          0.757
Mettu_4148
PFAM- Integrase, catalytic core; KEGG- net-Neut_2192 integrase catalytic subunit; overlaps another CDS with the same product name (287 aa)
 
   
  0.642
Mettu_0511
KEGG- net-Neut_2192 integrase catalytic subunit; manually curated; PFAM- Integrase, catalytic core (270 aa)
 
   
  0.639
EGW21735.1
KEGG- net-Neut_2192 integrase catalytic subunit; manually curated; PFAM- Integrase, catalytic core (270 aa)
 
   
  0.639
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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