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STRINGSTRING
Mettu_0113 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0113" - PFAM: Globin, truncated bacterial-like in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0113PFAM- Globin, truncated bacterial-like; KEGG- mca-MCA1878 hypothetical protein (131 aa)    
Predicted Functional Partners:
Mettu_0114
KEGG- mca-MCA0402 hypothetical protein; manually curated; PFAM- Protein of unknown function DUF45 (241 aa)
              0.669
Mettu_0112
PFAM- Uncharacterised protein family UPF0005; KEGG- azo-azo0911 carrier/transport protein; Belongs to the BI1 family (222 aa)
              0.577
Mettu_1940
Methane monooxygenase; KEGG- tbi-Tbis_0140 oxidoreductase FAD/NAD(P)-binding domain-containing protein; PFAM- Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin (345 aa)
 
   
  0.531
Mettu_3391
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (301 aa)
       
    0.424
Mettu_2993
KEGG- reh-H16_B1516 iron sulfur cluster assembly protein (SufU); TIGRFAM- SUF system FeS cluster assembly, SufU scaffold; PFAM- NIF system FeS cluster assembly, NifU, N-terminal (150 aa)
       
    0.408
Mettu_3279
Protein-glutamate methylesterase; SMART- MCP methyltransferase, CheR-type; PAS; PAC motif; TIGRFAM- PAS; KEGG- geo-Geob_3789 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM- Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold-3 (976 aa)
       
    0.401
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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