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Mettu_0288 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0288" - PFAM: Cupin 2, conserved barrel in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0288PFAM- Cupin 2, conserved barrel; KEGG- har-HEAR2969 hypothetical protein (109 aa)    
Predicted Functional Partners:
Mettu_3612
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide (704 aa)
       
  0.757
Mettu_2825
KEGG- alv-Alvin_2084 chorismate mutase; TIGRFAM- Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM- Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT (361 aa)
       
  0.740
guaB
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family (488 aa)
         
  0.660
Mettu_0287
KEGG- mba-Mbar_A0261 hypothetical protein (754 aa)
              0.540
Mettu_3755
RNA polymerase, sigma 32 subunit, RpoH; KEGG- nde-NIDE0990 RNA polymerase sigma factor RpoD (sigma-70); TIGRFAM- RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 (448 aa)
       
      0.516
rpoS
KEGG- alv-Alvin_0780 RNA polymerase sigma-70 subunit RpoD subfamily; TIGRFAM- RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 (342 aa)
       
      0.516
Mettu_2662
KEGG- RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM- RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; Belongs to the sigma-70 factor family (391 aa)
       
      0.516
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (602 aa)
       
      0.516
rpoH
RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes (285 aa)
       
      0.516
Mettu_1275
Mannose-1-phosphate guanylyltransferase; KEGG- hch-HCH_04833 nucleoside-diphosphate-sugar pyrophosphorylase; PFAM- Nucleotidyl transferase; Cystathionine beta-synthase, core (350 aa)
       
    0.481
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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