Mettu_0453 protein (Methylobacter tundripaludum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mettu_0453

CRISPR-associated RAMP protein, Cmr6 family (368 aa)

Predicted Functional Partners:

Mettu_0455

0.991

Mettu_0457

0.977

Mettu_0458

0.921

Mettu_0456

0.921

Mettu_0454

0.871

Mettu_0459

0.724

Mettu_0452

0.509

cas1

0.493

Mettu_0446

0.456

Mettu_0810

0.426

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mettu_0446	Mettu_0453	Mettu_0446	Mettu_0453	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	CRISPR-associated RAMP protein, Cmr6 family	0.456
Mettu_0446	Mettu_0455	Mettu_0446	Mettu_0455	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	CRISPR-associated RAMP protein, Cmr4 family	0.629
Mettu_0446	Mettu_0457	Mettu_0446	Mettu_0457	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	CRISPR-associated protein, Crm2 family	0.605
Mettu_0446	Mettu_0458	Mettu_0446	Mettu_0458	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	CRISPR-associated protein TM1795 family protein	0.552
Mettu_0446	Mettu_0459	Mettu_0446	Mettu_0459	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	Conserved hypothetical cytosolic protein	0.625
Mettu_0446	Mettu_0810	Mettu_0446	Mettu_0810	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	CRISPR-associated helicase Cas3	0.533
Mettu_0446	cas1	Mettu_0446	Mettu_0800	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	CRISPR-associated endonuclease Cas1 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	0.540
Mettu_0452	Mettu_0453	Mettu_0452	Mettu_0453	Putative uncharacterized protein	CRISPR-associated RAMP protein, Cmr6 family	0.509
Mettu_0452	Mettu_0454	Mettu_0452	Mettu_0454	Putative uncharacterized protein	CRISPR-associated protein, Cmr5 family	0.494
Mettu_0452	Mettu_0455	Mettu_0452	Mettu_0455	Putative uncharacterized protein	CRISPR-associated RAMP protein, Cmr4 family	0.494
Mettu_0453	Mettu_0446	Mettu_0453	Mettu_0446	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated endoribonuclease Cas2 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	0.456
Mettu_0453	Mettu_0452	Mettu_0453	Mettu_0452	CRISPR-associated RAMP protein, Cmr6 family	Putative uncharacterized protein	0.509
Mettu_0453	Mettu_0454	Mettu_0453	Mettu_0454	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated protein, Cmr5 family	0.871
Mettu_0453	Mettu_0455	Mettu_0453	Mettu_0455	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated RAMP protein, Cmr4 family	0.991
Mettu_0453	Mettu_0456	Mettu_0453	Mettu_0456	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated protein, Cmr3	0.921
Mettu_0453	Mettu_0457	Mettu_0453	Mettu_0457	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated protein, Crm2 family	0.977
Mettu_0453	Mettu_0458	Mettu_0453	Mettu_0458	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated protein TM1795 family protein	0.921
Mettu_0453	Mettu_0459	Mettu_0453	Mettu_0459	CRISPR-associated RAMP protein, Cmr6 family	Conserved hypothetical cytosolic protein	0.724
Mettu_0453	Mettu_0810	Mettu_0453	Mettu_0810	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated helicase Cas3	0.426
Mettu_0453	cas1	Mettu_0453	Mettu_0800	CRISPR-associated RAMP protein, Cmr6 family	CRISPR-associated endonuclease Cas1 ; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette	0.493

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2018

Credits

Access

Info

About