Mettu_0550 protein (Methylobacter tundripaludum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

Mettu_0550

Putative uncharacterized protein (171 aa)

Predicted Functional Partners:

Mettu_0551

0.889

Mettu_0648

0.552

Mettu_4383

0.489

Mettu_3639

0.489

Mettu_0524

0.489

Mettu_3906

0.412

Mettu_0552

0.410

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Mettu_0524	Mettu_0550	Transport-associated protein	Putative uncharacterized protein	0.489
Mettu_0550	Mettu_0524	Putative uncharacterized protein	Transport-associated protein	0.489
Mettu_0550	Mettu_0551	Putative uncharacterized protein	Transport-associated protein	0.889
Mettu_0550	Mettu_0552	Putative uncharacterized protein	Putative uncharacterized protein	0.410
Mettu_0550	Mettu_0648	Putative uncharacterized protein	Rubredoxin-type Fe(Cys)4 protein	0.552
Mettu_0550	Mettu_3639	Putative uncharacterized protein	Transport-associated protein	0.489
Mettu_0550	Mettu_3906	Putative uncharacterized protein	Glycosyl transferase group 1	0.412
Mettu_0550	Mettu_4383	Putative uncharacterized protein	Transport-associated protein	0.489
Mettu_0551	Mettu_0550	Transport-associated protein	Putative uncharacterized protein	0.889
Mettu_0551	Mettu_0552	Transport-associated protein	Putative uncharacterized protein	0.438
Mettu_0552	Mettu_0550	Putative uncharacterized protein	Putative uncharacterized protein	0.410
Mettu_0552	Mettu_0551	Putative uncharacterized protein	Transport-associated protein	0.438
Mettu_0648	Mettu_0550	Rubredoxin-type Fe(Cys)4 protein	Putative uncharacterized protein	0.552
Mettu_3639	Mettu_0550	Transport-associated protein	Putative uncharacterized protein	0.489
Mettu_3906	Mettu_0550	Glycosyl transferase group 1	Putative uncharacterized protein	0.412
Mettu_4383	Mettu_0550	Transport-associated protein	Putative uncharacterized protein	0.489

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Cooccurrence

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Coexpression

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