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STRINGSTRING
Mettu_0645 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0645" - PFAM: O-antigen ligase-related in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0645PFAM- O-antigen ligase-related; KEGG- meh-M301_2021 O-antigen polymerase (404 aa)    
Predicted Functional Partners:
Mettu_0169
KEGG- cyn-Cyan7425_2988 hypothetical protein (747 aa)
 
          0.648
Mettu_2111
SMART- ATPase, AAA+ type, core; KEGG- bac-BamMC406_0007 AAA ATPase (387 aa)
   
          0.599
Mettu_3462
KEGG- hypothetical protein (666 aa)
   
          0.598
Mettu_0056
KEGG- mca-MCA1290 hypothetical protein (145 aa)
   
          0.596
Mettu_1961
KEGG- pst-PSPTO_0030 hypothetical protein (614 aa)
   
          0.566
Mettu_1857
PFAM- Glycosyl transferase, family 2; KEGG- meh-M301_2022 glycosyl transferase family 2 (248 aa)
   
  0.548
Mettu_0644
TIGRFAM- Adenylosuccinate lyase; KEGG- tgr-Tgr7_1849 adenylosuccinate lyase; PFAM- Adenylosuccinate lyase C-terminal; Fumarate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily (454 aa)
              0.507
Mettu_3335
KEGG- mca-MCA2833 hypothetical protein (320 aa)
   
          0.499
Mettu_0039
AIG2 family protein; PFAM- AIG2-like; KEGG- bja-bll7352 hypothetical protein (134 aa)
   
          0.485
Mettu_1299
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose; In the N-terminal section; belongs to the carbohydrate kinase PfkB family (506 aa)
 
     
  0.481
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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