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hflD protein (Methylobacter tundripaludum) - STRING interaction network
"hflD" - High frequency lysogenization protein HflD homolog in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hflDHigh frequency lysogenization protein HflD homolog (207 aa)    
Predicted Functional Partners:
Mettu_0746
Diguanylate phosphodiesterase (399 aa)
              0.859
Mettu_0744
ABC transporter-like protein (309 aa)
   
        0.857
mnmA
tRNA-specific 2-thiouridylase MnmA ; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (363 aa)
   
   
  0.815
Mettu_0073
tRNA methyl transferase-like protein (348 aa)
   
   
  0.786
Mettu_0838
Cell division protein ZipA ; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins (234 aa)
   
          0.718
rnt
Exoribonuclease T ; Trims short 3’ overhangs of a variety of RNA species, leaving a one or two nucleotide 3’ overhang. Responsible for the end-turnover of tRNA- specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis (207 aa)
   
        0.712
Mettu_0644
Adenylosuccinase (454 aa)
 
   
  0.665
Mettu_0642
NUDIX hydrolase (153 aa)
 
        0.610
recF
DNA replication and repair protein RecF ; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (358 aa)
   
        0.601
Mettu_1900
YcgL domain-containing protein Mettu_1900 (85 aa)
   
          0.581
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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