• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
xseB protein (Methylobacter tundripaludum) - STRING interaction network
"xseB" - Exodeoxyribonuclease 7 small subunit in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family (77 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family (452 aa)
 
  0.996
Mettu_0750
KEGG- mca-MCA0818 geranyltranstransferase; PFAM- Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family (298 aa)
 
   
  0.986
Mettu_1550
PFAM- Protein of unknown function DUF1631; KEGG- mca-MCA3053 hypothetical protein (717 aa)
   
  0.971
Mettu_1697
Trans-hexaprenyltranstransferase; KEGG- mca-MCA2996 octaprenyl-diphosphate synthase; PFAM- Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family (336 aa)
   
   
  0.871
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily (630 aa)
   
        0.710
Mettu_1042
KEGG- psb-Psyr_1298 RecJ exonuclease; TIGRFAM- Bacterial RecJ exonuclease; PFAM- Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 (581 aa)
 
     
  0.567
Mettu_2618
TIGRFAM- Oxaloacetate decarboxylase, alpha subunit; KEGG- pmy-Pmen_2893 oxaloacetate decarboxylase; PFAM- Conserved carboxylase region; Pyruvate carboxyltransferase; Biotin/lipoyl attachment (601 aa)
 
          0.477
argA
Amino-acid acetyltransferase; KEGG- mca-MCA2084 N-acetylglutamate synthase; TIGRFAM- Amino-acid N-acetyltransferase (ArgA); PFAM- Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily (438 aa)
         
  0.463
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3’- to 5’- polarity. Unwinds branched duplex DNA (Y-DNA) (699 aa)
         
  0.451
Mettu_0749
annotation not available (67 aa)
              0.448
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (14%) [HD]