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Mettu_0805 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0805" - KEGG: nwa:Nwat_1401 CSE4 family CRISPR-associated protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0805KEGG- nwa-Nwat_1401 CSE4 family CRISPR-associated protein; TIGRFAM- CRISPR-associated protein, CT1975; PFAM- CRISPR-associated protein, CT1975 (422 aa)    
Predicted Functional Partners:
Mettu_0804
KEGG- nwa-Nwat_1400 Cas5 family CRISPR-associated protein; TIGRFAM- CRISPR-associated protein, Cas5e-type; CRISPR-associated protein Cas5; PFAM- CRISPR-associated protein, Cas5e-type (230 aa)
 
 
  0.998
Mettu_0803
KEGG- nwa-Nwat_1399 CSE3 family CRISPR-associated protein; TIGRFAM- CRISPR-associated protein, CT1974; PFAM- CRISPR-associated protein, CT1974 (205 aa)
 
 
  0.998
Mettu_0809
CRISPR-associated protein, Cse1 family; KEGG- epy-EpC_08080 hypothetical protein; TIGRFAM- CRISPR-associated protein Cse1; PFAM- CRISPR-associated protein Cse1 (508 aa)
 
 
  0.997
Mettu_0808
KEGG- nwa-Nwat_1402 CSE2 family CRISPR-associated protein; TIGRFAM- CRISPR-associated protein Cse2; PFAM- CRISPR-associated protein Cse2 (158 aa)
   
 
  0.993
Mettu_0810
TIGRFAM- Helicase Cas3, CRISPR-associated, core; CRISPR-associated HD domain; PFAM- DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG- gsu-GSU1384 hypothetical protein; SMART- DEAD-like helicase, N-terminal (919 aa)
 
 
  0.984
Mettu_0799
KEGG- nwa-Nwat_1397 CRISPR-associated protein Cas2; TIGRFAM- CRISPR-associated protein, Cas2; PFAM- CRISPR-associated protein, Cas2 (101 aa)
 
   
  0.948
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (303 aa)
 
   
  0.948
Mettu_0807
KEGG- rfe-RF_0889 hypothetical protein (85 aa)
              0.845
Mettu_0806
PFAM- Protein of unknown function DUF2442; KEGG- amc-MADE_00619 hypothetical protein (86 aa)
              0.845
Mettu_0802
Antitoxin; Antitoxin component of a toxin-antitoxin (TA) module (91 aa)
              0.674
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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