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rlmD protein (Methylobacter tundripaludum) - STRING interaction network
"rlmD" - 23S rRNA(m5U1939)-methyltransferase in Methylobacter tundripaludum
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rlmD23S rRNA(m5U1939)-methyltransferase ; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA (444 aa)    
Predicted Functional Partners:
Mettu_3769
Ribosomal RNA small subunit methyltransferase B (435 aa)
   
  0.913
Mettu_0882
Putative uncharacterized protein (195 aa)
              0.883
truA
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (267 aa)
   
   
  0.840
Mettu_0847
Cysteine synthase (299 aa)
 
      0.830
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (282 aa)
     
   
  0.820
Mettu_2273
Cysteine synthase (325 aa)
   
      0.806
Mettu_0884
ErfK/YbiS/YcfS/YnhG family protein (168 aa)
 
          0.793
Mettu_4346
Nicotinamide nucleotide repair protein ; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (487 aa)
   
        0.703
Mettu_3674
Ribosomal RNA small subunit methyltransferase D ; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle (185 aa)
   
 
  0.697
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (342 aa)
   
   
  0.695
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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