STRINGSTRING
Mettu_0989 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_0989" - Biopolymer transport protein ExbD/TolR in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_0989Biopolymer transport protein ExbD/TolR (143 aa)    
Predicted Functional Partners:
Mettu_0988
MotA/TolQ/ExbB proton channel (204 aa)
 
 
  0.997
Mettu_1600
TonB family protein (292 aa)
 
 
  0.979
lpxK
Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (333 aa)
   
        0.925
Mettu_0430
MotA/TolQ/ExbB proton channel (262 aa)
 
 
  0.894
Mettu_2248
Protein TonB ; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (271 aa)
 
 
  0.870
Mettu_2378
Protein TonB ; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (266 aa)
 
 
  0.869
Mettu_0431
TonB family protein (253 aa)
 
 
  0.860
Mettu_2308
TonB family protein (259 aa)
   
 
  0.841
Mettu_3547
Protein TolQ (225 aa)
   
 
  0.831
Mettu_2379
MotA/TolQ/ExbB proton channel (221 aa)
   
 
  0.829
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (19%) [HD]