Mettu_1037 protein (Methylobacter tundripaludum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mettu_1037

UPF0434 protein Mettu_1037 (64 aa)

Predicted Functional Partners:

lpxB

0.924

kdsB

0.887

lpxK

0.840

Mettu_3001

0.678

Mettu_1036

0.538

Mettu_1039

0.526

Mettu_2820

0.498

Mettu_0988

0.498

Mettu_4200

0.493

Mettu_3678

0.493

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mettu_0988	Mettu_1037	Mettu_0988	Mettu_1037	MotA/TolQ/ExbB proton channel	UPF0434 protein Mettu_1037	0.498
Mettu_0988	Mettu_2820	Mettu_0988	Mettu_2820	MotA/TolQ/ExbB proton channel	Protein tyrosine phosphatase	0.498
Mettu_0988	Mettu_3001	Mettu_0988	Mettu_3001	MotA/TolQ/ExbB proton channel	DNA internalization-related competence protein ComEC/Rec2	0.499
Mettu_0988	Mettu_3678	Mettu_0988	Mettu_3678	MotA/TolQ/ExbB proton channel	Xenobiotic-transporting ATPase	0.499
Mettu_0988	kdsB	Mettu_0988	Mettu_1038	MotA/TolQ/ExbB proton channel	CMP-2-keto-3-deoxyoctulosonic acid synthase ; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	0.741
Mettu_0988	lpxB	Mettu_0988	Mettu_0463	MotA/TolQ/ExbB proton channel	Lipid-A-disaccharide synthase ; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	0.544
Mettu_0988	lpxK	Mettu_0988	Mettu_0990	MotA/TolQ/ExbB proton channel	Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA)	0.952
Mettu_1036	Mettu_1037	Mettu_1036	Mettu_1037	Putative uncharacterized protein	UPF0434 protein Mettu_1037	0.538
Mettu_1036	kdsB	Mettu_1036	Mettu_1038	Putative uncharacterized protein	CMP-2-keto-3-deoxyoctulosonic acid synthase ; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	0.538
Mettu_1037	Mettu_0988	Mettu_1037	Mettu_0988	UPF0434 protein Mettu_1037	MotA/TolQ/ExbB proton channel	0.498
Mettu_1037	Mettu_1036	Mettu_1037	Mettu_1036	UPF0434 protein Mettu_1037	Putative uncharacterized protein	0.538
Mettu_1037	Mettu_1039	Mettu_1037	Mettu_1039	UPF0434 protein Mettu_1037	LL-diaminopimelate aminotransferase	0.526
Mettu_1037	Mettu_2820	Mettu_1037	Mettu_2820	UPF0434 protein Mettu_1037	Protein tyrosine phosphatase	0.498
Mettu_1037	Mettu_3001	Mettu_1037	Mettu_3001	UPF0434 protein Mettu_1037	DNA internalization-related competence protein ComEC/Rec2	0.678
Mettu_1037	Mettu_3678	Mettu_1037	Mettu_3678	UPF0434 protein Mettu_1037	Xenobiotic-transporting ATPase	0.493
Mettu_1037	Mettu_4200	Mettu_1037	Mettu_4200	UPF0434 protein Mettu_1037	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I	0.493
Mettu_1037	kdsB	Mettu_1037	Mettu_1038	UPF0434 protein Mettu_1037	CMP-2-keto-3-deoxyoctulosonic acid synthase ; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria	0.887
Mettu_1037	lpxB	Mettu_1037	Mettu_0463	UPF0434 protein Mettu_1037	Lipid-A-disaccharide synthase ; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	0.924
Mettu_1037	lpxK	Mettu_1037	Mettu_0990	UPF0434 protein Mettu_1037	Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA)	0.840
Mettu_1039	Mettu_1037	Mettu_1039	Mettu_1037	LL-diaminopimelate aminotransferase	UPF0434 protein Mettu_1037	0.526

page 1 of 4

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About