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STRINGSTRING
Mettu_1053 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1053" - PFAM: LysR, substrate-binding in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1053PFAM- LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG- LysR family transcriptional regulator (307 aa)    
Predicted Functional Partners:
Mettu_3921
PFAM- 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG- rce-RC1_1947 3-hydroxyacyl-CoA dehydrogenase, putative (779 aa)
       
  0.660
Mettu_1054
annotation not available (43 aa)
              0.626
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (337 aa)
 
 
      0.583
Mettu_2899
KEGG- mca-MCA0665 glycine cleavage system transcriptional repressor, putative (186 aa)
        
  0.574
Mettu_1058
PFAM- Major facilitator superfamily MFS-1; KEGG- npu-Npun_F6253 major facilitator transporter (405 aa)
 
 
 
  0.520
Mettu_3318
SMART- Helix-turn-helix, AraC domain; KEGG- smd-Smed_5231 helix-turn-helix domain-containing protein (268 aa)
    
   
  0.503
Mettu_2825
KEGG- alv-Alvin_2084 chorismate mutase; TIGRFAM- Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM- Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT (361 aa)
       
  0.484
Mettu_3068
Manually curated; KEGG- gca-Galf_1930 transcriptional regulator, AraC family (305 aa)
    
   
  0.484
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
         
  0.472
Mettu_0738
KEGG- mca-MCA0825 AraC family transcriptional regulator; PFAM- Helix-turn-helix, AraC type; SMART- Helix-turn-helix, AraC domain (276 aa)
    
   
  0.471
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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