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STRINGSTRING
Mettu_1108 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1108" - PFAM: Aspartyl/Asparaginyl beta-hydroxylase in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1108PFAM- Aspartyl/Asparaginyl beta-hydroxylase; KEGG- cak-Caul_3221 aspartyl/asparaginyl beta-hydroxylase (395 aa)    
Predicted Functional Partners:
Mettu_1110
KEGG- ppw-PputW619_0672 hypothetical protein (334 aa)
          0.982
Mettu_1107
PFAM- GCN5-related N-acetyltransferase; KEGG- hch-HCH_06057 acetyltransferase (169 aa)
 
          0.843
Mettu_1885
KEGG- aav-Aave_4496 hypothetical protein (167 aa)
          0.805
Mettu_1109
annotation not available (68 aa)
              0.749
Mettu_1105
PFAM- Phage Tail Collar; KEGG- ote-Oter_4253 tail collar domain-containing protein (223 aa)
 
          0.699
Mettu_1111
KEGG- cps-CPS_4428 hypothetical protein (350 aa)
   
          0.577
Mettu_3319
PFAM- Phytanoyl-CoA dioxygenase; KEGG- aba-Acid345_4531 phytanoyl-CoA dioxygenase (346 aa)
 
          0.539
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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