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Mettu_1111 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1111" - KEGG: cps:CPS_4428 hypothetical protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1111KEGG- cps-CPS_4428 hypothetical protein (350 aa)    
Predicted Functional Partners:
Mettu_3319
PFAM- Phytanoyl-CoA dioxygenase; KEGG- aba-Acid345_4531 phytanoyl-CoA dioxygenase (346 aa)
 
          0.879
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (361 aa)
   
 
  0.818
Mettu_2781
Magnesium chelatase; PFAM- von Willebrand factor, type A; Magnesium chelatase, ChlI subunit; KEGG- hse-Hsero_2656 Mg-chelatase subunit ChlI protein; SMART- von Willebrand factor, type A; ATPase, AAA+ type, core (629 aa)
     
 
  0.791
Mettu_3769
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (435 aa)
   
 
  0.667
nusB
Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons (144 aa)
   
      0.646
Mettu_1108
PFAM- Aspartyl/Asparaginyl beta-hydroxylase; KEGG- cak-Caul_3221 aspartyl/asparaginyl beta-hydroxylase (395 aa)
   
          0.577
Mettu_1112
KEGG- sse-Ssed_2614 cold-shock DNA-binding domain-containing protein; PFAM- Cold-shock protein, DNA-binding; SMART- Cold shock protein (66 aa)
              0.562
Mettu_3492
PFAM- Protein of unknown function DUF938; KEGG- hypothetical protein (198 aa)
     
  0.548
Mettu_3316
PFAM- Tellurite resistance methyltransferase, TehB, core; KEGG- mmb-Mmol_1986 methyltransferase type 12 (174 aa)
     
  0.548
rsmJ
Ribosomal RNA small subunit methyltransferase J; Specifically methylates the guanosine in position 1516 of 16S rRNA (260 aa)
     
  0.548
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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