STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW22312.1PFAM: Prophage CP4-57 regulatory; KEGG: dds:Ddes_1227 phage transcriptional regulator, AlpA. (88 aa)    
Predicted Functional Partners:
EGW20347.1
TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: alv:Alvin_0264 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding.
     
 0.931
EGW21964.1
KEGG: mca:MCA2039 glutamate synthase, large subunit; PFAM: Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, central-C; Glutamate synthase, alpha subunit, C-terminal.
    
  0.896
EGW22311.1
Hypothetical protein.
       0.773
EGW20773.1
acetyl-CoA acetyltransferase; KEGG: azc:AZC_2972 thiolase; TIGRFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.539
EGW22118.1
KEGG: ttu:TERTU_0352 putative L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; Belongs to the LDH/MDH superfamily.
     
 0.501
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.501
EGW19834.1
KEGG: mca:MCA0716 hypothetical protein.
     
 0.486
EGW22313.1
KEGG: hypothetical protein.
       0.470
EGW20772.1
PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: rce:RC1_1947 3-hydroxyacyl-CoA dehydrogenase, putative.
     
 0.464
EGW21518.1
KEGG: nhl:Nhal_1482 aconitate hydratase; TIGRFAM: Aconitase, putative; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel.
     
 0.463
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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