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rpsP protein (Methylobacter tundripaludum) - STRING interaction network
"rpsP" - 30S ribosomal protein S16 in Methylobacter tundripaludum
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsP30S ribosomal protein S16 (83 aa)    
Predicted Functional Partners:
rpsJ
30S ribosomal protein S10 ; Involved in the binding of tRNA to the ribosomes (103 aa)
     
  0.998
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (75 aa)
   
  0.998
rpsG
30S ribosomal protein S7 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (156 aa)
   
  0.998
rpsI
30S ribosomal protein S9 (131 aa)
 
  0.998
rpsL
30S ribosomal protein S12 ; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit (124 aa)
     
  0.997
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (113 aa)
 
 
  0.996
rpsO
30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
 
  0.996
rpsB
30S ribosomal protein S2 (245 aa)
 
  0.995
rpsF
30S ribosomal protein S6 ; Binds together with S18 to 16S ribosomal RNA (152 aa)
     
  0.994
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (164 aa)
   
 
  0.994
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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