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STRINGSTRING
Mettu_1296 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1296" - PFAM: Radical SAM in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1296PFAM- Radical SAM; KEGG- geo-Geob_0662 radical SAM domain protein (464 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (355 aa)
       
  0.939
Mettu_0723
KEGG- gca-Galf_1632 uroporphyrinogen decarboxylase (URO-D) (342 aa)
       
  0.924
Mettu_1299
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose; In the N-terminal section; belongs to the carbohydrate kinase PfkB family (506 aa)
 
          0.837
Mettu_1295
KEGG- tdn-Suden_0183 hypothetical protein (605 aa)
              0.832
Mettu_1300
KEGG- rpa-RPA3927 phosphoheptose isomerase (187 aa)
 
          0.818
Mettu_1302
PFAM- Radical SAM; KEGG- gca-Galf_1100 radical SAM domain-containing protein (366 aa)
 
       
0.811
Mettu_1298
Pyruvate dehydrogenase (Acetyl-transferring); KEGG- rpb-RPB_3808 acetoin dehydrogenase (TPP-dependent) alpha chain; PFAM- Dehydrogenase, E1 component; overlaps another CDS with the same product name (358 aa)
   
        0.785
Mettu_1297
Pyruvate dehydrogenase (Acetyl-transferring); KEGG- rpx-Rpdx1_1427 transketolase central region; PFAM- Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; overlaps another CDS with the same product name (356 aa)
              0.783
Mettu_1301
UDP-glucose 4-epimerase; KEGG- mgm-Mmc1_1063 NAD-dependent epimerase/dehydratase; PFAM- NAD-dependent epimerase/dehydratase (328 aa)
              0.770
Mettu_3480
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1212 aa)
         
  0.601
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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