• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_1417 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1417" - KEGG: mca:MCA1406 serine--glyoxylate aminotransferase in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1417KEGG- mca-MCA1406 serine--glyoxylate aminotransferase; PFAM- Aminotransferase, class V/Cysteine desulfurase (388 aa)    
Predicted Functional Partners:
metK
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (386 aa)
     
 
    0.951
Mettu_1418
Glyoxylate reductase; KEGG- mca-MCA1407 2-hydroxyacid dehydrogenase; PFAM- D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (323 aa)
 
  0.933
Mettu_2468
PFAM- Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG- mca-MCA0381 carbon-nitrogen family hydrolase (267 aa)
     
 
    0.926
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily (672 aa)
 
      0.916
Mettu_3554
TIGRFAM- D-3-phosphoglycerate dehydrogenase; KEGG- dol-Dole_2852 D-3-phosphoglycerate dehydrogenase; PFAM- D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT (527 aa)
 
  0.892
Mettu_0443
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family (803 aa)
   
 
    0.860
Mettu_2277
PFAM- FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich region, CCG; KEGG- acp-A2cp1_3218 FAD linked oxidase domain protein (1224 aa)
   
 
    0.855
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (963 aa)
 
 
  0.848
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (417 aa)
   
 
  0.840
Mettu_3553
TIGRFAM- HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG- cre-CHLREDRAFT_194322 phosphoserine phosphatase; PFAM- Haloacid dehalogenase-like hydrolase (213 aa)
   
  0.829
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (9%) [HD]