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STRINGSTRING
Mettu_1441 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1441" - Integrase family protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1441Integrase family protein; PFAM- Integrase, catalytic core, phage; KEGG- ana-alr7203 integrase/recombinase; Belongs to the ’phage’ integrase family (311 aa)    
Predicted Functional Partners:
Mettu_1442
annotation not available (78 aa)
              0.845
xerC
TIGRFAM- Tyrosine recombinase XerC; HAMAP- Tyrosine recombinase xerC; KEGG- tgr-Tgr7_0047 tyrosine recombinase XerC; PFAM- Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Belongs to the ’phage’ integrase family. XerC subfamily (302 aa)
    
0.740
Mettu_0356
Integrase family protein; PFAM- Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG- rme-Rmet_6252 phage integrase-like SAM-like; overlaps another CDS with the same product name; Belongs to the ’phage’ integrase family (382 aa)
    
          0.739
Mettu_1443
KEGG- pca-Pcar_0804 hypothetical protein (159 aa)
              0.675
hflX
GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis (421 aa)
    
      0.419
Mettu_1444
annotation not available (98 aa)
              0.407
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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