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rsmI protein (Methylobacter tundripaludum) - STRING interaction network
"rsmI" - rRNA in Methylobacter tundripaludum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
rsmIrRNA (cytidine-2’-O-)-methyltransferase RsmI ; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (286 aa)    
Predicted Functional Partners:
Mettu_1534
LppC family lipoprotein (632 aa)
   
   
  0.883
Mettu_1535
UPF0102 protein Mettu_1535 (121 aa)
   
   
  0.797
Mettu_3089
DNA polymerase III, subunits gamma and tau (540 aa)
 
        0.777
Mettu_1624
Ribosomal RNA small subunit methyltransferase E ; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (253 aa)
 
   
  0.771
rsmH
rRNA (cytosine-N(4)-)-methyltransferase RsmH ; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (308 aa)
 
   
  0.741
rlmB
23S rRNA Gm2251 2’-O-methyltransferase ; Specifically methylates the ribose of guanosine 2251 in 23S rRNA (248 aa)
   
   
  0.718
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (672 aa)
   
   
  0.707
rsmG
16S rRNA 7-methylguanosine methyltransferase ; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA (211 aa)
 
   
  0.689
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (117 aa)
 
   
  0.660
Mettu_0829
DNA polymerase III, delta prime subunit (352 aa)
 
        0.654
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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