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bamD protein (Methylobacter tundripaludum) - STRING interaction network
"bamD" - Outer membrane protein assembly factor BamD in Methylobacter tundripaludum
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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bamDOuter membrane protein assembly factor BamD ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (279 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (793 aa)
 
  0.999
bamB
Outer membrane protein assembly factor BamB ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (416 aa)
   
  0.997
bamE
Outer membrane protein assembly factor BamE ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (187 aa)
   
 
  0.958
surA
Rotamase SurA ; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation (434 aa)
   
   
  0.860
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (81 aa)
 
      0.803
Mettu_1560
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (314 aa)
   
        0.787
rne
Ribonuclease E ; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs (819 aa)
 
     
  0.761
Mettu_1559
Multi-copper polyphenol oxidoreductase, laccase (283 aa)
              0.753
lolA
Outer-membrane lipoprotein carrier protein ; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (196 aa)
   
   
  0.744
lptD
LPS-assembly protein LptD ; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (985 aa)
   
   
  0.679
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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