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rpsT protein (Methylobacter tundripaludum) - STRING interaction network
"rpsT" - 30S ribosomal protein S20 in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (87 aa)    
Predicted Functional Partners:
rpsU
TIGRFAM- Ribosomal protein S21; HAMAP- Ribosomal protein S21; KEGG- mca-MCA2991 ribosomal protein S21; PFAM- Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (77 aa)
   
  0.996
rpsI
PFAM- Ribosomal protein S9; KEGG- mca-MCA0905 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (131 aa)
     
  0.993
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
   
  0.993
rpsP
TIGRFAM- Ribosomal protein S16; HAMAP- Ribosomal protein S16; KEGG- saz-Sama_0889 30S ribosomal protein S16; PFAM- Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (83 aa)
   
  0.992
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (103 aa)
   
  0.990
rpsB
KEGG- mca-MCA0567 30S ribosomal protein S2; TIGRFAM- Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM- Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family (245 aa)
   
  0.989
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
     
  0.988
rpmE
50S ribosomal protein L31; Binds the 23S rRNA (66 aa)
   
  0.987
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (87 aa)
   
  0.986
rpmA
TIGRFAM- Ribosomal protein L27; HAMAP- Ribosomal protein L27; KEGG- 50S ribosomal protein L27; PFAM- Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (85 aa)
   
  0.986
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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