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speA protein (Methylobacter tundripaludum) - STRING interaction network
"speA" - Biosynthetic arginine decarboxylase in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speABiosynthetic arginine decarboxylase ; Catalyzes the biosynthesis of agmatine from arginine (608 aa)    
Predicted Functional Partners:
Mettu_0161
Agmatine deiminase (341 aa)
 
   
  0.982
Mettu_0651
Arginase (288 aa)
   
  0.977
Mettu_1498
Aspartate transaminase (393 aa)
       
    0.921
argH
Arginosuccinase (482 aa)
         
  0.882
Mettu_0466
Aspartate transaminase (388 aa)
       
    0.860
Mettu_0157
N-carbamoylputrescine amidase (294 aa)
 
   
  0.849
rpsT
30S ribosomal protein S20 ; Binds directly to 16S ribosomal RNA (87 aa)
       
      0.847
Mettu_1736
Spermidine synthase (282 aa)
         
  0.750
Mettu_1039
LL-diaminopimelate aminotransferase (394 aa)
       
    0.685
Mettu_0485
Succinyldiaminopimelate transaminase (435 aa)
       
    0.685
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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