• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_1791 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1791" - TIGRFAM: dTDP-glucose 4,6-dehydratase in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1791TIGRFAM- dTDP-glucose 4,6-dehydratase; KEGG- app-CAP2UW1_1144 dTDP-glucose 4,6-dehydratase; PFAM- NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily (355 aa)    
Predicted Functional Partners:
Mettu_1788
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3’ and C5’positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose; Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family (181 aa)
  0.999
Mettu_1789
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (295 aa)
  0.999
Mettu_1790
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family (300 aa)
  0.995
Mettu_3911
Nucleotide sugar dehydrogenase; KEGG- rfr-Rfer_0667 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM- Nucleotide sugar dehydrogenase; PFAM- UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family (426 aa)
 
 
  0.914
Mettu_2838
TIGRFAM- UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG- mca-MCA2203 UTP-glucose-1-phosphate uridylyltransferase; PFAM- Nucleotidyl transferase (293 aa)
 
   
  0.885
Mettu_3892
KEGG- cyj-Cyan7822_5727 glutamine--scyllo-inositol transaminase; PFAM- DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family (398 aa)
 
 
  0.851
Mettu_4264
PFAM- Nucleotidyl transferase; KEGG- alv-Alvin_2540 nucleotidyl transferase (223 aa)
 
 
  0.837
Mettu_3507
TIGRFAM- UDP-glucose 4-epimerase; KEGG- mei-Msip34_1820 UDP-glucose 4-epimerase; PFAM- NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family (337 aa)
 
 
0.820
Mettu_2189
TIGRFAM- Nucleotide sugar dehydrogenase; KEGG- mca-MCA2487 UDP-glucose 6-dehydrogenase; PFAM- UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family (439 aa)
 
 
  0.810
Mettu_3921
PFAM- 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG- rce-RC1_1947 3-hydroxyacyl-CoA dehydrogenase, putative (779 aa)
       
  0.804
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (9%) [HD]