STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW23010.1KEGG: hypothetical protein. (244 aa)    
Predicted Functional Partners:
EGW23011.1
KEGG: HipA domain-containing protein.
 
   
 0.953
EGW22371.1
KEGG: pfo:Pfl01_1998 hypothetical protein.
  
     0.594
EGW21811.1
Helix-turn-helix domain protein; KEGG: reh:H16_B0114 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
     0.583
EGW20400.1
PFAM: Fusaric acid resistance protein conserved region; KEGG: kva:Kvar_0766 fusaric acid resistance protein conserved region.
  
     0.566
EGW20302.1
Hypothetical protein; KEGG: nmu:Nmul_A0618 putative cytochrome c1 signal peptide protein.
  
     0.561
EGW21112.1
KEGG: aex:Astex_1574 hypothetical protein.
  
     0.552
EGW20397.1
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
     0.514
EGW20006.1
PFAM: Protein of unknown function DUF2070, membrane; KEGG: antibiotic biosynthesis protein.
  
     0.485
EGW22614.1
Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; KEGG: mca:MCA0168 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core.
  
     0.480
recD
Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]
       0.452
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.