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Mettu_1880 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_1880" - KEGG: nhl:Nhal_3648 general secretion pathway protein D in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_1880KEGG- nhl-Nhal_3648 general secretion pathway protein D; TIGRFAM- Type II secretion system gspD; PFAM- Type II/III secretion system; NolW-like (712 aa)    
Predicted Functional Partners:
Mettu_1872
KEGG- mca-MCA1116 general secretion pathway protein G; TIGRFAM- General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM- Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal (157 aa)
 
  0.986
Mettu_1871
PFAM- Type II secretion system F domain; KEGG- mca-MCA1115 general secretion pathway protein F (404 aa)
 
 
  0.981
Mettu_1873
TIGRFAM- General secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; KEGG- nhl-Nhal_0442 general secretion pathway protein H; overlaps another CDS with the same product name (174 aa)
 
   
    0.972
Mettu_1876
KEGG- noc-Noc_0757 general secretion pathway protein K (336 aa)
 
   
  0.971
Mettu_1877
PFAM- Fimbrial assembly; KEGG- mca-MCA1121 general secretion pathway protein L, putative (390 aa)
 
     
  0.969
Mettu_1875
KEGG- noc-Noc_0756 general secretion pathway protein J (258 aa)
 
          0.955
Mettu_1874
KEGG- nhl-Nhal_0443 general secretion pathway protein H; overlaps another CDS with the same product name (133 aa)
 
   
  0.950
Mettu_1878
PFAM- General secretion pathway protein M; KEGG- mca-MCA1122 general secretion pathway protein, putative (195 aa)
 
     
  0.935
Mettu_1879
KEGG- alv-Alvin_3007 hypothetical protein (217 aa)
         
  0.909
Mettu_1870
General secretory pathway protein E; TIGRFAM- Type II secretion system gspE; PFAM- Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG- mca-MCA1114 general secretion pathway protein E; SMART- ATPase, AAA+ type, core (560 aa)
 
 
  0.890
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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