• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_2112 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2112" - KEGG: bac:BamMC406_0006 cell divisionFtsK/SpoIIIE in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2112KEGG- bac-BamMC406_0006 cell divisionFtsK/SpoIIIE; PFAM- Cell divisionFtsK/SpoIIIE; SMART- ATPase, AAA+ type, core (498 aa)    
Predicted Functional Partners:
Mettu_2113
DNA sulfur modification protein DndD; KEGG- nis-NIS_1680 hypothetical protein; TIGRFAM- DNA sulphur modification protein DndD; PFAM- RecF/RecN/SMC protein, N-terminal (678 aa)
 
        0.878
Mettu_2115
PFAM- Phosphoadenosine phosphosulphate reductase; KEGG- tgr-Tgr7_0620 phosphoadenosine phosphosulfate reductase (382 aa)
              0.866
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (930 aa)
 
 
  0.857
Mettu_2114
annotation not available (64 aa)
              0.845
Mettu_2111
SMART- ATPase, AAA+ type, core; KEGG- bac-BamMC406_0007 AAA ATPase (387 aa)
 
          0.842
Mettu_2110
KEGG- bac-BamMC406_0008 hypothetical protein (296 aa)
              0.755
Mettu_2147
TIGRFAM- ParB-like partition protein; PFAM- ParB-like nuclease; KEGG- pag-PLES_59581 chromosome partitioning protein Spo0J; SMART- ParB-like nuclease; Belongs to the ParB family (287 aa)
 
     
  0.743
ftsQ
Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly (260 aa)
     
 
  0.701
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (821 aa)
     
 
  0.663
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily (630 aa)
     
 
  0.663
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (9%) [HD]