STRINGSTRING
xerC protein (Methylobacter tundripaludum) - STRING interaction network
"xerC" - Tyrosine recombinase XerC in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC ; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (302 aa)    
Predicted Functional Partners:
Mettu_1441
Integrase family protein (311 aa)
   
0.921
xerD
Tyrosine recombinase XerD (294 aa)
   
0.921
Mettu_2196
Putative uncharacterized protein (227 aa)
   
        0.913
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (275 aa)
   
        0.887
lysA
Diaminopimelate decarboxylase ; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (415 aa)
   
        0.730
Mettu_2194
Uncharacterized protein UCP029693 (356 aa)
              0.632
Mettu_2600
Cell division FtsK/SpoIIIE (759 aa)
   
   
  0.626
Mettu_2193
Lipase (104 aa)
              0.625
pepA
Leucyl aminopeptidase ; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides (501 aa)
           
  0.614
ruvB
Holliday junction ATP-dependent DNA helicase RuvB ; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (344 aa)
   
 
  0.569
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (12%) [HD]