• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_2196 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2196" - PFAM: Protein of unknown function DUF484 in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2196PFAM- Protein of unknown function DUF484; KEGG- mca-MCA0860 hypothetical protein (227 aa)    
Predicted Functional Partners:
xerC
TIGRFAM- Tyrosine recombinase XerC; HAMAP- Tyrosine recombinase xerC; KEGG- tgr-Tgr7_0047 tyrosine recombinase XerC; PFAM- Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Belongs to the ’phage’ integrase family. XerC subfamily (302 aa)
   
        0.927
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (275 aa)
   
        0.904
Mettu_2193
Lipase; KEGG- neu-NE0570 lipase (104 aa)
 
          0.691
Mettu_1600
TonB family protein; TIGRFAM- TonB, C-terminal; KEGG- mca-MCA2337 TonB-dependent receptor, putative (292 aa)
   
          0.655
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (415 aa)
   
        0.648
Mettu_2194
PFAM- Uncharacterised conserved protein UCP029693; KEGG- mca-MCA0862 hypothetical protein (356 aa)
   
        0.646
Mettu_1836
Sporulation domain-containing protein; PFAM- Sporulation/cell division region, bacteria; KEGG- tgr-Tgr7_0262 hypothetical protein (198 aa)
   
        0.646
Mettu_1804
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division (99 aa)
   
          0.645
Mettu_2439
HemY domain protein; PFAM- HemY, N-terminal; KEGG- mca-MCA3062 HemY protein, putative (410 aa)
 
        0.626
Mettu_3801
KEGG- pfl-PFL_2118 MerR family transcriptional regulator; PFAM- HTH transcriptional regulator, MerR; SMART- HTH transcriptional regulator, MerR (117 aa)
   
          0.608
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (10%) [HD]