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STRINGSTRING
Mettu_2454 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2454" - PFAM: RDD in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2454PFAM- RDD; KEGG- nwa-Nwat_1709 RDD domain-containing protein (156 aa)    
Predicted Functional Partners:
Mettu_2455
annotation not available (59 aa)
              0.845
Mettu_0173
PFAM- Cytochrome c1; KEGG- noc-Noc_0297 cytochrome c1 (240 aa)
   
          0.734
Mettu_2452
KEGG- noc-Noc_0208 oligopeptidase A; PFAM- Peptidase M3A/M3B, thimet/oligopeptidase F (695 aa)
              0.671
Mettu_2453
PFAM- Metal-dependent hydrolase HDOD; Cyclic nucleotide-binding; KEGG- hch-HCH_05853 signal transduction protein (452 aa)
              0.668
Mettu_2451
UbiD family decarboxylase; KEGG- abo-ABO_2465 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM- Carboxylyase-related; PFAM- Carboxylyase-related; Belongs to the UbiD family (486 aa)
              0.668
Mettu_2183
PFAM- Cytochrome c, class I; KEGG- vex-VEA_001915 cytochrome c4 (220 aa)
   
          0.632
Mettu_0175
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (199 aa)
   
          0.624
Mettu_0174
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (468 aa)
   
          0.590
Mettu_2264
KEGG- azo-azo2342 putative cytochrome c4 (197 aa)
   
          0.587
Mettu_2457
TIGRFAM- 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG- mca-MCA2313 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM- 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (167 aa)
         
  0.515
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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