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STRINGSTRING
Mettu_2480 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2480" - PFAM: Protein of unknown function DUF1239 in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2480PFAM- Protein of unknown function DUF1239; KEGG- mca-MCA0744 hypothetical protein (189 aa)    
Predicted Functional Partners:
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (184 aa)
 
  0.994
Mettu_2482
Molybdate-transporting ATPase; PFAM- ABC transporter-like; KEGG- mca-MCA0742 ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core (261 aa)
   
  0.991
Mettu_2479
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family (185 aa)
   
   
  0.960
Mettu_2478
Arabinose 5-phosphate isomerase; SMART- Cystathionine beta-synthase, core; TIGRFAM- KpsF/GutQ; KEGG- nwa-Nwat_0300 KpsF/GutQ family protein; PFAM- Sugar isomerase (SIS); Cystathionine beta-synthase, core (325 aa)
   
   
  0.910
Mettu_3654
TIGRFAM- Flagellar export FliJ; KEGG- nwa-Nwat_2201 flagellar export protein FliJ (152 aa)
   
          0.749
Mettu_2483
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (481 aa)
   
   
  0.711
lptE
LPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane (165 aa)
   
   
  0.686
Mettu_3768
KEGG- aeh-Mlg_2625 hypothetical protein (194 aa)
   
          0.684
Mettu_2484
KEGG- alv-Alvin_2848 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM- Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM- Ribosomal protein S30Ae/sigma 54 modulation protein (96 aa)
   
   
  0.601
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (985 aa)
 
 
  0.534
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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