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lptA protein (Methylobacter tundripaludum) - STRING interaction network
"lptA" - Lipopolysaccharide export system protein LptA in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
lptALipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (184 aa)    
Predicted Functional Partners:
Mettu_2480
PFAM- Protein of unknown function DUF1239; KEGG- mca-MCA0744 hypothetical protein (189 aa)
 
  0.994
Mettu_2482
Molybdate-transporting ATPase; PFAM- ABC transporter-like; KEGG- mca-MCA0742 ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core (261 aa)
   
 
  0.988
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (985 aa)
 
  0.938
Mettu_2479
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family (185 aa)
   
        0.901
Mettu_2478
Arabinose 5-phosphate isomerase; SMART- Cystathionine beta-synthase, core; TIGRFAM- KpsF/GutQ; KEGG- nwa-Nwat_0300 KpsF/GutQ family protein; PFAM- Sugar isomerase (SIS); Cystathionine beta-synthase, core (325 aa)
   
        0.897
Mettu_2788
KEGG- nwa-Nwat_1289 hypothetical protein (902 aa)
   
  0.742
Mettu_2535
PFAM- Permease YjgP/YjgQ, predicted; KEGG- mca-MCA2100 hypothetical protein; overlaps another CDS with the same product name (383 aa)
 
  0.737
Mettu_2536
PFAM- Permease YjgP/YjgQ, predicted; KEGG- mca-MCA2101 hypothetical protein; overlaps another CDS with the same product name (357 aa)
 
  0.727
Mettu_2483
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (481 aa)
   
   
  0.726
Mettu_2484
KEGG- alv-Alvin_2848 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM- Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM- Ribosomal protein S30Ae/sigma 54 modulation protein (96 aa)
   
        0.613
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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